Marine Ecosystem Toolkit for Optimization and Simulation in 3-D
Metos3D is a collection of simulation software, models and data intended to be used for simulation and optimization of marine ecosystem models. Metos3D is organized in separate git repositories. The current versions are:
|metos3d||main script, should be run as a shell command|
|simpack||main software, transport driver|
|model||marine biogeochemical/ecosystem models|
|data||geometry data, forcing data, transport matrices|
To install the toolkit, just paste the following line into your terminal: (python and curl required):
python -c "$(curl -fsSL https://github.com/metos3d/metos3d/raw/master/install.py)"
You will be able to choose a directory where the code will be installed in.
The main scientific document can be found at:
A technical report explaining the
matrix command can be found at:
Additionally, each repository consists of a documentation folder named
Metos3D needs the Portable, Extensible Toolkit for Scientific Computation (PETSc) to run.
Important changes that has been accomplished lately:
– Diagnostic versions of the N, N-DOP, ..., NPZD-DOP models have been added.
– The BGC API includes now diagnostic variables. See: metos3d-model.pdf
matrix command has been added.
– Metos3D works with PETSc 3.7 now.
The software was written by Jaroslaw Piwonski at Kiel University, Dep. of Computer Science. It uses data that were aggregated form original data provided by Samar Khatiwala .
The homepage concept is copied from GitHub Pages and the homebrew project.
Have trouble installing Metos3D? Contact Thomas Slawig.